A keras-based real-time model for medical image segmentation (CFPNet-M)

Overview

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation

Result
Result
Result
Result
Result
This repository contains the implementation of a novel light-weight real-time network (CFPNet-Medicine: CFPNet-M) to segment different types of biomedical images. It is a medical version of CFPNet, and the dataset we used from top to bottom are **DRIVE, ISBI-2012, Infrared Breast, CVC-ClinicDB and ISIC 2018**. The details of CFPNet-M and CFPNet can be found here respectively.

CFPNet-M, CFPNet Paper, DC-UNet and CFPNet Code

Architecture of CFPNet-M

CFP module

Result

CFPNet-M

Result

Dataset

In this project, we test five datasets:

  • Infrared Breast Dataset
  • Endoscopy (CVC-ClinicDB)
  • Electron Microscopy (ISBI-2012)
  • Drive (Digital Retinal Image)
  • Dermoscopy (ISIC-2018)

Usage

Prerequisities

The following dependencies are needed:

  • Kearas == 2.2.4
  • Opencv == 3.3.1
  • Tensorflow == 1.10.0
  • Matplotlib == 3.1.3
  • Numpy == 1.19.1

training

You can download the datasets you want to try, and just run: for UNet, DC-UNet, MultiResUNet, ICNet, CFPNet-M, ESPNet and ENet, the code is in the folder network. For Efficient-b0, MobileNet-v2 and Inception-v3, the code is in the main.py. Choose the segmentation model you want to test and run:

main.py

Segmentation Results of Five datasets

Result_table
Result_table

Speed and FLOPs

The code of calculate FLOPs are in main.py, you can run them after training.

Result_table

Citation

@article{lou2021cfpnet,
  title={CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation},
  author={Lou, Ange and Guan, Shuyue and Loew, Murray},
  journal={arXiv preprint arXiv:2105.04075},
  year={2021}
}

@article{lou2021cfpnet,
  title={CFPNet: Channel-wise Feature Pyramid for Real-Time Semantic Segmentation},
  author={Lou, Ange and Loew, Murray},
  journal={arXiv preprint arXiv:2103.12212},
  year={2021}
}

@inproceedings{lou2021dc,
  title={DC-UNet: rethinking the U-Net architecture with dual channel efficient CNN for medical image segmentation},
  author={Lou, Ange and Guan, Shuyue and Loew, Murray H},
  booktitle={Medical Imaging 2021: Image Processing},
  volume={11596},
  pages={115962T},
  year={2021},
  organization={International Society for Optics and Photonics}
}
Code release for "Self-Tuning for Data-Efficient Deep Learning" (ICML 2021)

Self-Tuning for Data-Efficient Deep Learning This repository contains the implementation code for paper: Self-Tuning for Data-Efficient Deep Learning

THUML @ Tsinghua University 101 Dec 11, 2022
This program creates a formatted excel file which highlights the undervalued stock according to Graham's number.

Over-and-Undervalued-Stocks Of Nepse Using Graham's Number Scrap the latest data using different websites and creates a formatted excel file that high

6 May 03, 2022
[PNAS2021] The neural architecture of language: Integrative modeling converges on predictive processing

The neural architecture of language: Integrative modeling converges on predictive processing Code accompanying the paper The neural architecture of la

Martin Schrimpf 36 Dec 01, 2022
NEG loss implemented in pytorch

Pytorch Negative Sampling Loss Negative Sampling Loss implemented in PyTorch. Usage neg_loss = NEG_loss(num_classes, embedding_size) optimizer =

Daniil Gavrilov 123 Sep 13, 2022
Deep Markov Factor Analysis (NeurIPS2021)

Deep Markov Factor Analysis (DMFA) Codes and experiments for deep Markov factor analysis (DMFA) model accepted for publication at NeurIPS2021: A. Farn

Sarah Ostadabbas 2 Dec 16, 2022
Implementation of the paper "Fine-Tuning Transformers: Vocabulary Transfer"

Transformer-vocabulary-transfer Implementation of the paper "Fine-Tuning Transfo

LEYA 13 Nov 30, 2022
RM Operation can equivalently convert ResNet to VGG, which is better for pruning; and can help RepVGG perform better when the depth is large.

RMNet: Equivalently Removing Residual Connection from Networks This repository is the official implementation of "RMNet: Equivalently Removing Residua

184 Jan 04, 2023
QRec: A Python Framework for quick implementation of recommender systems (TensorFlow Based)

Introduction QRec is a Python framework for recommender systems (Supported by Python 3.7.4 and Tensorflow 1.14+) in which a number of influential and

Yu 1.4k Dec 30, 2022
A benchmark dataset for mesh multi-label-classification based on cube engravings introduced in MeshCNN

Double Cube Engravings This script creates a dataset for multi-label mesh clasification, with an intentionally difficult setup for point cloud classif

Yotam Erel 1 Nov 30, 2021
MixRNet(Using mixup as regularization and tuning hyper-parameters for ResNets)

MixRNet(Using mixup as regularization and tuning hyper-parameters for ResNets) Using mixup data augmentation as reguliraztion and tuning the hyper par

Bhanu 2 Jan 16, 2022
Distributing reference energies for SMIRNOFF implementations

Warning: This code is currently experimental and under active development. Is it not yet suitable for distribution or use as reference implementation.

Open Force Field Initiative 1 Dec 07, 2021
NAS-FCOS: Fast Neural Architecture Search for Object Detection (CVPR 2020)

NAS-FCOS: Fast Neural Architecture Search for Object Detection This project hosts the train and inference code with pretrained model for implementing

Ning Wang 180 Dec 06, 2022
Official repo for BMVC2021 paper ASFormer: Transformer for Action Segmentation

ASFormer: Transformer for Action Segmentation This repo provides training & inference code for BMVC 2021 paper: ASFormer: Transformer for Action Segme

42 Dec 23, 2022
Code for the ICCV 2021 paper "Pixel Difference Networks for Efficient Edge Detection" (Oral).

Microsoft365_devicePhish Abusing Microsoft 365 OAuth Authorization Flow for Phishing Attack This is a simple proof-of-concept script that allows an at

Alex 236 Dec 21, 2022
Existing Literature about Machine Unlearning

Machine Unlearning Papers 2021 Brophy and Lowd. Machine Unlearning for Random Forests. In ICML 2021. Bourtoule et al. Machine Unlearning. In IEEE Symp

Jonathan Brophy 213 Jan 08, 2023
Cave Generation using metaballs in Blender. Originally created by sdfgeoff, Edited by Myself (Archie Jaskowicz).

Blender-Cave-Generation Cave Generation using metaballs in Blender. Originally created by sdfgeoff, Edited by Myself (Archie Jaskowicz). Installation

2 Dec 28, 2022
DeiT: Data-efficient Image Transformers

DeiT: Data-efficient Image Transformers This repository contains PyTorch evaluation code, training code and pretrained models for DeiT (Data-Efficient

Facebook Research 3.2k Jan 06, 2023
Image Segmentation using U-Net, U-Net with skip connections and M-Net architectures

Brain-Image-Segmentation Segmentation of brain tissues in MRI image has a number of applications in diagnosis, surgical planning, and treatment of bra

Angad Bajwa 8 Oct 27, 2022
Kernel Point Convolutions

Created by Hugues THOMAS Introduction Update 27/04/2020: New PyTorch implementation available. With SemanticKitti, and Windows supported. This reposit

Hugues THOMAS 584 Jan 07, 2023
Pytorch implementation for Patient Knowledge Distillation for BERT Model Compression

Patient Knowledge Distillation for BERT Model Compression Knowledge distillation for BERT model Installation Run command below to install the environm

Siqi 180 Dec 19, 2022