Dragonfly is an open source python library for scalable Bayesian optimisation.

Overview


Dragonfly is an open source python library for scalable Bayesian optimisation.

Bayesian optimisation is used for optimising black-box functions whose evaluations are usually expensive. Beyond vanilla optimisation techniques, Dragonfly provides an array of tools to scale up Bayesian optimisation to expensive large scale problems. These include features/functionality that are especially suited for high dimensional optimisation (optimising for a large number of variables), parallel evaluations in synchronous or asynchronous settings (conducting multiple evaluations in parallel), multi-fidelity optimisation (using cheap approximations to speed up the optimisation process), and multi-objective optimisation (optimising multiple functions simultaneously).

Dragonfly is compatible with Python2 (>= 2.7) and Python3 (>= 3.5) and has been tested on Linux, macOS, and Windows platforms. For documentation, installation, and a getting started guide, see our readthedocs page. For more details, see our paper.

 

Installation

See here for detailed instructions on installing Dragonfly and its dependencies.

Quick Installation: If you have done this kind of thing before, you should be able to install Dragonfly via pip.

$ sudo apt-get install python-dev python3-dev gfortran # On Ubuntu/Debian
$ pip install numpy
$ pip install dragonfly-opt -v

Testing the Installation: You can import Dragonfly in python to test if it was installed properly. If you have installed via source, make sure that you move to a different directory to avoid naming conflicts.

$ python
>>> from dragonfly import minimise_function
>>> # The first argument below is the function, the second is the domain, and the third is the budget.
>>> min_val, min_pt, history = minimise_function(lambda x: x ** 4 - x**2 + 0.1 * x, [[-10, 10]], 10);  
...
>>> min_val, min_pt
(-0.32122746026750953, array([-0.7129672]))

Due to stochasticity in the algorithms, the above values for min_val, min_pt may be different. If you run it for longer (e.g. min_val, min_pt, history = minimise_function(lambda x: x ** 4 - x**2 + 0.1 * x, [[-10, 10]], 100)), you should get more consistent values for the minimum.

If the installation fails or if there are warning messages, see detailed instructions here.

 

Quick Start

Dragonfly can be used directly in the command line by calling dragonfly-script.py or be imported in python code via the maximise_function function in the main library or in ask-tell mode. To help get started, we have provided some examples in the examples directory. See our readthedocs getting started pages (command line, Python, Ask-Tell) for examples and use cases.

Command line: Below is an example usage in the command line.

$ cd examples
$ dragonfly-script.py --config synthetic/branin/config.json --options options_files/options_example.txt

In Python code: The main APIs for Dragonfly are defined in dragonfly/apis. For their definitions and arguments, see dragonfly/apis/opt.py and dragonfly/apis/moo.py. You can import the main API in python code via,

from dragonfly import minimise_function, maximise_function
func = lambda x: x ** 4 - x**2 + 0.1 * x
domain = [[-10, 10]]
max_capital = 100
min_val, min_pt, history = minimise_function(func, domain, max_capital)
print(min_val, min_pt)
max_val, max_pt, history = maximise_function(lambda x: -func(x), domain, max_capital)
print(max_val, max_pt)

Here, func is the function to be maximised, domain is the domain over which func is to be optimised, and max_capital is the capital available for optimisation. The domain can be specified via a JSON file or in code. See here, here, here, here, here, here, here, here, here, here, and here for more detailed examples.

In Ask-Tell Mode: Ask-tell mode provides you more control over your experiments where you can supply past results to our API in order to obtain a recommendation. See the following example for more details.

For a comprehensive list of uses cases, including multi-objective optimisation, multi-fidelity optimisation, neural architecture search, and other optimisation methods (besides Bayesian optimisation), see our readthe docs pages (command line, Python, Ask-Tell)).

 

Contributors

Kirthevasan Kandasamy: github, webpage
Karun Raju Vysyaraju: github, linkedin
Anthony Yu: github, linkedin
Willie Neiswanger: github, webpage
Biswajit Paria: github, webpage
Chris Collins: github, webpage

Acknowledgements

Research and development of the methods in this package were funded by DOE grant DESC0011114, NSF grant IIS1563887, the DARPA D3M program, and AFRL.

Citation

If you use any part of this code in your work, please cite our JMLR paper.

@article{JMLR:v21:18-223,
  author  = {Kirthevasan Kandasamy and Karun Raju Vysyaraju and Willie Neiswanger and Biswajit Paria and Christopher R. Collins and Jeff Schneider and Barnabas Poczos and Eric P. Xing},
  title   = {Tuning Hyperparameters without Grad Students: Scalable and Robust Bayesian Optimisation with Dragonfly},
  journal = {Journal of Machine Learning Research},
  year    = {2020},
  volume  = {21},
  number  = {81},
  pages   = {1-27},
  url     = {http://jmlr.org/papers/v21/18-223.html}
}

License

This software is released under the MIT license. For more details, please refer LICENSE.txt.

For questions, please email [email protected].

"Copyright 2018-2019 Kirthevasan Kandasamy"

Simulation of early COVID-19 using SIR model and variants (SEIR ...).

COVID-19-simulation Simulation of early COVID-19 using SIR model and variants (SEIR ...). Made by the Laboratory of Sustainable Life Assessment (GYRO)

José Paulo Pereira das Dores Savioli 1 Nov 17, 2021
PennyLane is a cross-platform Python library for differentiable programming of quantum computers

PennyLane is a cross-platform Python library for differentiable programming of quantum computers. Train a quantum computer the same way as a neural ne

PennyLaneAI 1.6k Jan 01, 2023
Automated Machine Learning Pipeline with Feature Engineering and Hyper-Parameters Tuning

The mljar-supervised is an Automated Machine Learning Python package that works with tabular data. I

MLJAR 2.4k Jan 02, 2023
A Multipurpose Library for Synthetic Time Series Generation in Python

TimeSynth Multipurpose Library for Synthetic Time Series Please cite as: J. R. Maat, A. Malali, and P. Protopapas, “TimeSynth: A Multipurpose Library

278 Dec 26, 2022
Contains an implementation (sklearn API) of the algorithm proposed in "GENDIS: GEnetic DIscovery of Shapelets" and code to reproduce all experiments.

GENDIS GENetic DIscovery of Shapelets In the time series classification domain, shapelets are small subseries that are discriminative for a certain cl

IDLab Services 90 Oct 28, 2022
Software Engineer Salary Prediction

Based on 2021 stack overflow data, this machine learning web application helps one predict the salary based on years of experience, level of education and the country they work in.

Jhanvi Mimani 1 Jan 08, 2022
STUMPY is a powerful and scalable Python library for computing a Matrix Profile, which can be used for a variety of time series data mining tasks

STUMPY STUMPY is a powerful and scalable library that efficiently computes something called the matrix profile, which can be used for a variety of tim

TD Ameritrade 2.5k Jan 06, 2023
Winning solution for the Galaxy Challenge on Kaggle

Winning solution for the Galaxy Challenge on Kaggle

Sander Dieleman 483 Jan 02, 2023
Generate music from midi files using BPE and markov model

Generate music from midi files using BPE and markov model

Aditya Khadilkar 37 Oct 24, 2022
healthy and lesion models for learning based on the joint estimation of stochasticity and volatility

health-lesion-stovol healthy and lesion models for learning based on the joint estimation of stochasticity and volatility Reference please cite this p

5 Nov 01, 2022
An easier way to build neural search on the cloud

Jina is geared towards building search systems for any kind of data, including text, images, audio, video and many more. With the modular design & multi-layer abstraction, you can leverage the effici

Jina AI 17k Jan 01, 2023
This is the material used in my free Persian course: Machine Learning with Python

This is the material used in my free Persian course: Machine Learning with Python

Yara Mohamadi 4 Aug 07, 2022
a distributed deep learning platform

Apache SINGA Distributed deep learning system http://singa.apache.org Quick Start Installation Examples Issues JIRA tickets Code Analysis: Mailing Lis

The Apache Software Foundation 2.7k Jan 05, 2023
Implementations of Machine Learning models, Regularizers, Optimizers and different Cost functions.

Linear Models Implementations of LinearRegression, LassoRegression and RidgeRegression with appropriate Regularizers and Optimizers. Linear Regression

Keivan Ipchi Hagh 1 Nov 22, 2021
Greykite: A flexible, intuitive and fast forecasting library

The Greykite library provides flexible, intuitive and fast forecasts through its flagship algorithm, Silverkite.

LinkedIn 1.4k Jan 15, 2022
Confidence intervals for scikit-learn forest algorithms

forest-confidence-interval: Confidence intervals for Forest algorithms Forest algorithms are powerful ensemble methods for classification and regressi

272 Dec 01, 2022
SIMD-accelerated bitwise hamming distance Python module for hexidecimal strings

hexhamming What does it do? This module performs a fast bitwise hamming distance of two hexadecimal strings. This looks like: DEADBEEF = 1101111010101

Michael Recachinas 12 Oct 14, 2022
Evidently helps analyze machine learning models during validation or production monitoring

Evidently helps analyze machine learning models during validation or production monitoring. The tool generates interactive visual reports and JSON profiles from pandas DataFrame or csv files. Current

Evidently AI 3.1k Jan 07, 2023
Getting Profit and Loss Make Easy From Binance

Getting Profit and Loss Make Easy From Binance I have been in Binance Automated Trading for some time and have generated a lot of transaction records,

17 Dec 21, 2022
MCML is a toolkit for semi-supervised dimensionality reduction and quantitative analysis of Multi-Class, Multi-Label data

MCML is a toolkit for semi-supervised dimensionality reduction and quantitative analysis of Multi-Class, Multi-Label data. We demonstrate its use

Pachter Lab 26 Nov 29, 2022