Event Coding for the HV Protocol MEG datasets

pip  install git+https://github.com/nih-megcore/hv_proc

#Required path variables - typically set in .bashrc
export hv_meg_path=${MEGPATH}
export hv_logfile_path=${LOGPATH}

#Installation will place hv_process.py on the commandline path. 
hv_process.py 
   
    

#Example usage
hv_process.py -subjid ${subjid} -extract_all_triggers -QA_all

optional arguments:
  -h, --help            show this help message and exit
  -subjid SUBJID        subject 8-digit data acqusition hash ID
  -list_subjects        Print out all of the subjects in the MEG folder
  -airpuff              Process triggers for airpuff dataset
  -hariri               Process triggers for Hariri hammer dataset
  -sternberg            Process triggers for Sternberg task
  -gonogo               Process triggers for gonogo task
  -oddball              Process triggers for auditory oddball task
  -extract_all_triggers
                        Loop over all datasets and process the triggers for the
                        subject
  -QA_all               Run QA tests on all of the datasets to ensure the trigger
                        count is appropriate
  -QA_task task [task ...]
                        Provide a task to QA. Must be one or more of the following:
                        airpuff oddball hariri sternberg gonogo Tasks are separated
                        by a space
  -print_stim_counts task [task ...]
                        Print out the current value counts from the Markerfile.mrk.
                        Can specify a datatype or 'all' to loop over all datasets
  -scrub_openneuro      Scrub the path from the markerfile.mrk and remove extra
                        files [.bak and .hist]