Repository for self-supervised landmark discovery

Overview

self-supervised-landmarks

Repository for self-supervised landmark discovery

Requirements

  • pytorch
  • pynrrd (for 3d images)

Usage

The use of this models is via config files, an example config file for Shepp-logan phantom dataset is given in ./configs/phantom_data.json

To train the model

python train.py --model="2d or 3d" --config_file="path to config file"

The network could be 2d or 3d and the second argument is the config file path. all the other parameters including the save and data director is inside teh config file

For inference

python test.py --model="2d or 3d" --config_file="path to config file" --redu_remove --use_best --num_out=num ts to be retained

redu_remove is a boolean argument that determines if redundant points are removed or not use best is also a boolean argument that determines if the best checkpoint is used or the final checkpoint. num_out is an integer that determines the number of particles to be retained after redundancy removal

Reference

If you are utilizing this code please cite one of the following

  1. Leveraging unsupervised image registration for discovery of landmark shape descriptor
@article{bhalodia2021leveraging,
title = {Leveraging unsupervised image registration for discovery of landmark shape descriptor},
journal = {Medical Image Analysis},
volume = {73},
pages = {102157},
year = {2021},
issn = {1361-8415},
doi = {https://doi.org/10.1016/j.media.2021.102157},
url = {https://www.sciencedirect.com/science/article/pii/S1361841521002036},
author = {Riddhish Bhalodia and Shireen Elhabian and Ladislav Kavan and Ross Whitaker}
}
  1. Self-supervised discovery of anatomical shape landmarks
@inproceedings{bhalodia2020self,
  title={Self-supervised discovery of anatomical shape landmarks},
  author={Bhalodia, Riddhish and Kavan, Ladislav and Whitaker, Ross T},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={627--638},
  year={2020},
  organization={Springer}
}
Owner
Riddhish Bhalodia
Riddhish Bhalodia
Pytorch Implementation of Zero-Shot Image-to-Text Generation for Visual-Semantic Arithmetic

Pytorch Implementation of Zero-Shot Image-to-Text Generation for Visual-Semantic Arithmetic [Paper] [Colab is coming soon] Approach Example Usage To r

170 Jan 03, 2023
Imaging, analysis, and simulation software for radio interferometry

ehtim (eht-imaging) Python modules for simulating and manipulating VLBI data and producing images with regularized maximum likelihood methods. This ve

Andrew Chael 5.2k Dec 28, 2022
A PyTorch Implementation of Single Shot Scale-invariant Face Detector.

S³FD: Single Shot Scale-invariant Face Detector A PyTorch Implementation of Single Shot Scale-invariant Face Detector. Eval python wider_eval_pytorch.

carwin 235 Jan 07, 2023
Chinese named entity recognization with BiLSTM using Keras

Chinese named entity recognization (Bilstm with Keras) Project Structure ./ ├── README.md ├── data │   ├── README.md │   ├── data 数据集 │   │   ├─

1 Dec 17, 2021
Unifying Global-Local Representations in Salient Object Detection with Transformer

GLSTR (Global-Local Saliency Transformer) This is the official implementation of paper "Unifying Global-Local Representations in Salient Object Detect

11 Aug 24, 2022
Weak-supervised Visual Geo-localization via Attention-based Knowledge Distillation

Weak-supervised Visual Geo-localization via Attention-based Knowledge Distillation Introduction WAKD is a PyTorch implementation for our ICPR-2022 pap

2 Oct 20, 2022
A bare-bones TensorFlow framework for Bayesian deep learning and Gaussian process approximation

Aboleth A bare-bones TensorFlow framework for Bayesian deep learning and Gaussian process approximation [1] with stochastic gradient variational Bayes

Gradient Institute 127 Dec 12, 2022
Code and data accompanying our SVRHM'21 paper.

Code and data accompanying our SVRHM'21 paper. Requires tensorflow 1.13, python 3.7, scikit-learn, and pytorch 1.6.0 to be installed. Python scripts i

5 Nov 17, 2021
Python implementation of cover trees, near-drop-in replacement for scipy.spatial.kdtree

This is a Python implementation of cover trees, a data structure for finding nearest neighbors in a general metric space (e.g., a 3D box with periodic

Patrick Varilly 28 Nov 25, 2022
Simple transformer model for CIFAR10

CIFAR-Transformer Simple transformer model for CIFAR10. Reference: https://www.tensorflow.org/text/tutorials/transformer https://github.com/huggingfac

9 Nov 07, 2022
Implementation for Learning to Track with Object Permanence

Learning to Track with Object Permanence A video-based MOT approach capable of tracking through full occlusions: Learning to Track with Object Permane

Toyota Research Institute - Machine Learning 91 Jan 03, 2023
A short code in python, Enchpyter, is able to encrypt and decrypt words as you determine, of course

Enchpyter Enchpyter is a program do encrypt and decrypt any word you want (just letters). You enter how many letters jumps and write the word, so, the

João Assalim 2 Oct 10, 2022
Official Repo for ICCV2021 Paper: Learning to Regress Bodies from Images using Differentiable Semantic Rendering

[ICCV2021] Learning to Regress Bodies from Images using Differentiable Semantic Rendering Getting Started DSR has been implemented and tested on Ubunt

Sai Kumar Dwivedi 83 Nov 27, 2022
Winners of DrivenData's Overhead Geopose Challenge

Winners of DrivenData's Overhead Geopose Challenge

DrivenData 22 Aug 04, 2022
Learning the Beauty in Songs: Neural Singing Voice Beautifier; ACL 2022 (Main conference); Official code

Learning the Beauty in Songs: Neural Singing Voice Beautifier Jinglin Liu, Chengxi Li, Yi Ren, Zhiying Zhu, Zhou Zhao Zhejiang University ACL 2022 Mai

Jinglin Liu 257 Dec 30, 2022
DANA paper supplementary materials

DANA Supplements This repository stores the data, results, and R scripts to generate these reuslts and figures for the corresponding paper Depth Norma

0 Dec 17, 2021
Editing a Conditional Radiance Field

Editing Conditional Radiance Fields Project | Paper | Video | Demo Editing Conditional Radiance Fields Steven Liu, Xiuming Zhang, Zhoutong Zhang, Rich

Steven Liu 216 Dec 30, 2022
Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.

Picasso Code to generate Picasso embeddings of any input matrix. Picasso maps the points of an input matrix to user-defined, n-dimensional shape coord

Pachter Lab 45 Dec 23, 2022
This package is for running the semantic SLAM algorithm using extracted planar surfaces from the received detection

Semantic SLAM This package can perform optimization of pose estimated from VO/VIO methods which tend to drift over time. It uses planar surfaces extra

Hriday Bavle 125 Dec 02, 2022
frida工具的缝合怪

fridaUiTools fridaUiTools是一个界面化整理脚本的工具。新人的练手作品。参考项目ZenTracer,觉得既然可以界面化,那么应该可以把功能做的更加完善一些。跨平台支持:win、mac、linux 功能缝合怪。把一些常用的frida的hook脚本简单统一输出方式后,整合进来。并且

diveking 997 Jan 09, 2023