GPU Accelerated Non-rigid ICP for surface registration

Overview

GPU Accelerated Non-rigid ICP for surface registration

Introduction

Preivous Non-rigid ICP algorithm is usually implemented on CPU, and needs to solve sparse least square problem, which is time consuming. In this repo, we implement a pytorch version NICP algorithm based on paper Amberg et al. Detailedly, we leverage the AMSGrad to optimize the linear regresssion, and then found nearest points iteratively. Additionally, we smooth the calculated mesh with laplacian smoothness term. With laplacian smoothness term, the wireframe is also more neat.


Quick Start

install

We use python3.8 and cuda10.2 for implementation. The code is tested on Ubuntu 20.04.

  • The pytorch3d cannot be installed directly from pip install pytorch3d, for the installation of pytorch3d, see pytorch3d.
  • For other packages, run
pip install -r requirements.txt
  • For the template face model, currently we use a processed version of BFM face model from 3DMMfitting-pytorch, download the BFM09_model_info.mat from 3DMMfitting-pytorch and put it into the ./BFM folder.
  • For demo, run
python demo_nicp.py

we show demo for NICP mesh2mesh and NICP mesh2pointcloud. We have two param sets for registration:

milestones = set([50, 80, 100, 110, 120, 130, 140])
stiffness_weights = np.array([50, 20, 5, 2, 0.8, 0.5, 0.35, 0.2])
landmark_weights = np.array([5, 2, 0.5, 0, 0, 0, 0, 0])

This param set is used for registration on fine grained mesh

milestones = set([50, 100])
stiffness_weights = np.array([50, 20, 5])
landmark_weights = np.array([50, 20, 5])

This param set is used for registration on noisy point clouds

Templated Model

You can also use your own templated face model with manually specified landmarks.

Todo

Currently we write some batchwise functions, but batchwise NICP is not supported now. We will support batch NICP in further releases.

You might also like...
High performance Cross-platform Inference-engine, you could run Anakin on x86-cpu,arm, nv-gpu, amd-gpu,bitmain and cambricon devices.

Anakin2.0 Welcome to the Anakin GitHub. Anakin is a cross-platform, high-performance inference engine, which is originally developed by Baidu engineer

GrabGpu_py: a scripts for grab gpu when gpu is free

GrabGpu_py a scripts for grab gpu when gpu is free. WaitCondition: gpu_memory

A Robust Non-IoU Alternative to Non-Maxima Suppression in Object Detection
A Robust Non-IoU Alternative to Non-Maxima Suppression in Object Detection

Confluence: A Robust Non-IoU Alternative to Non-Maxima Suppression in Object Detection 1. 介绍 用以替代 NMS,在所有 bbox 中挑选出最优的集合。 NMS 仅考虑了 bbox 的得分,然后根据 IOU 来

A non-linear, non-parametric Machine Learning method capable of modeling complex datasets
A non-linear, non-parametric Machine Learning method capable of modeling complex datasets

Fast Symbolic Regression Symbolic Regression is a non-linear, non-parametric Machine Learning method capable of modeling complex data sets. fastsr aim

Code for
Code for "Learning to Segment Rigid Motions from Two Frames".

rigidmask Code for "Learning to Segment Rigid Motions from Two Frames". ** This is a partial release with inference and evaluation code.

Weakly Supervised Learning of Rigid 3D Scene Flow
Weakly Supervised Learning of Rigid 3D Scene Flow

Weakly Supervised Learning of Rigid 3D Scene Flow This repository provides code and data to train and evaluate a weakly supervised method for rigid 3D

Official PyTorch implementation of CAPTRA: CAtegory-level Pose Tracking for Rigid and Articulated Objects from Point Clouds
Official PyTorch implementation of CAPTRA: CAtegory-level Pose Tracking for Rigid and Articulated Objects from Point Clouds

CAPTRA: CAtegory-level Pose Tracking for Rigid and Articulated Objects from Point Clouds Introduction This is the official PyTorch implementation of o

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators
Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators. It's also a suite of learning algorithms to train agents to operate in these environments (PPO, SAC, evolutionary strategy, and direct trajectory optimization are implemented).

Code for ICCV 2021 paper: ARAPReg: An As-Rigid-As Possible Regularization Loss for Learning Deformable Shape Generators..
Code for ICCV 2021 paper: ARAPReg: An As-Rigid-As Possible Regularization Loss for Learning Deformable Shape Generators..

ARAPReg Code for ICCV 2021 paper: ARAPReg: An As-Rigid-As Possible Regularization Loss for Learning Deformable Shape Generators.. Installation The cod

Comments
  • Lack of file “BFM09_model_info.mat”

    Lack of file “BFM09_model_info.mat”

    Traceback (most recent call last): File "demo_nicp.py", line 28, in bfm_meshes, bfm_lm_index = load_bfm_model(torch.device('cuda:0')) File "/data/pytorch-nicp/bfm_model.py", line 15, in load_bfm_model bfm_meta_data = loadmat('BFM/BFM09_model_info.mat') File "/root/anaconda3/envs/pytorch3d/lib/python3.8/site-packages/scipy/io/matlab/mio.py", line 224, in loadmat with _open_file_context(file_name, appendmat) as f: File "/root/anaconda3/envs/pytorch3d/lib/python3.8/contextlib.py", line 113, in enter return next(self.gen) File "/root/anaconda3/envs/pytorch3d/lib/python3.8/site-packages/scipy/io/matlab/mio.py", line 17, in _open_file_context f, opened = _open_file(file_like, appendmat, mode) File "/root/anaconda3/envs/pytorch3d/lib/python3.8/site-packages/scipy/io/matlab/mio.py", line 45, in _open_file return open(file_like, mode), True FileNotFoundError: [Errno 2] No such file or directory: 'BFM/BFM09_model_info.mat'

    In 3DMMfitting-pytorch, there are only these files: BFM_exp_idx.mat BFM_front_idx.mat facemodel_info.mat README.md select_vertex_id.mat similarity_Lm3D_all.mat std_exp.txt

    opened by 675492062 2
  • What is the expected time needed for running demo_nicp.py?

    What is the expected time needed for running demo_nicp.py?

    Hello,

    On my computer it seems quite slow to run demo_nicp.py. At least it took more than 1 minutes to get final.obj. Is it correct?

    I ranAMM_NRR for non-rigit ICP registration with two 7000 vertices meshes. It needs ca 1 second with CPU on my computer. With GPU, it might be possible to do the same work in less than 100 ms?

    Thank you!

    opened by 1939938853 0
  • Hi, with landmarks: `landmarks = torch.from_numpy(np.array(landmarks)).to(device).long()`, maybe you can  reshape landmarks from torch.Size([1, 1, 68, 2]) to  torch.Size([1, 68, 2])

    Hi, with landmarks: `landmarks = torch.from_numpy(np.array(landmarks)).to(device).long()`, maybe you can reshape landmarks from torch.Size([1, 1, 68, 2]) to torch.Size([1, 68, 2])

    Hi, with landmarks: landmarks = torch.from_numpy(np.array(landmarks)).to(device).long(), maybe you can reshape landmarks from torch.Size([1, 1, 68, 2]) to torch.Size([1, 68, 2])

    Originally posted by @wuhaozhe in https://github.com/wuhaozhe/pytorch-nicp/issues/3#issuecomment-971453681 hi!I got output as torch.Size([1, 68, 512, 3]) torch.Size([1, 68, 2]) torch.Size([1, 512, 512, 3]) I think the shape of following tensors are right, but I meet the same problem. lm_vertex = torch.gather(lm_vertex, 2, column_index) RuntimeError: CUDA error: device-side assert triggered

    landmarks = torch.from_numpy(np.array(landmarks)).to(device).long()
    
    row_index = landmarks[:, :, 1].view(landmarks.shape[0], -1)
    column_index = landmarks[:, :, 0].view(landmarks.shape[0], -1)
    row_index = row_index.unsqueeze(2).unsqueeze(3).expand(landmarks.shape[0], landmarks.shape[1], shape_img.shape[2], shape_img.shape[3])
    column_index = column_index.unsqueeze(1).unsqueeze(3).expand(landmarks.shape[0], landmarks.shape[1], landmarks.shape[1], shape_img.shape[3])
    print(row_index.shape, landmarks.shape, shape_img.shape)
    
    opened by alicedingyueming 1
  • RuntimeError

    RuntimeError

    Traceback (most recent call last): File "demo_nicp.py", line 27, in target_lm_index, lm_mask = get_mesh_landmark(norm_meshes, dummy_render) File "/data/pytorch-nicp/landmark.py", line 37, in get_mesh_landmark row_index = row_index.unsqueeze(2).unsqueeze(3).expand(landmarks.shape[0], landmarks.shape[1], shape_img.shape[2], shape_img.shape[3]) RuntimeError: The expanded size of the tensor (1) must match the existing size (2) at non-singleton dimension 1. Target sizes: [1, 1, 512, 3]. Tensor sizes: [1, 2, 1, 1]

    I have already configure the environment,but it seems have some problems in the code.What can I do to solve this problem.

    opened by 675492062 8
Releases(v0.1)
Owner
Haozhe Wu
Research interests in Computer Vision and Machine Learning.
Haozhe Wu
The codes I made while I practiced various TensorFlow examples

TensorFlow_Exercises The codes I made while I practiced various TensorFlow examples About the codes I didn't create these codes by myself, but re-crea

Terry Taewoong Um 614 Dec 08, 2022
This is the code of NeurIPS'21 paper "Towards Enabling Meta-Learning from Target Models".

ST This is the code of NeurIPS 2021 paper "Towards Enabling Meta-Learning from Target Models". If you use any content of this repo for your work, plea

Su Lu 7 Dec 06, 2022
PyTorch implementation of deep GRAph Contrastive rEpresentation learning (GRACE).

GRACE The official PyTorch implementation of deep GRAph Contrastive rEpresentation learning (GRACE). For a thorough resource collection of self-superv

Big Data and Multi-modal Computing Group, CRIPAC 186 Dec 27, 2022
A toy compiler that can convert Python scripts to pickle bytecode 🥒

Pickora 🐰 A small compiler that can convert Python scripts to pickle bytecode. Requirements Python 3.8+ No third-party modules are required. Usage us

ꌗᖘ꒒ꀤ꓄꒒ꀤꈤꍟ 68 Jan 04, 2023
Deep Learning segmentation suite designed for 2D microscopy image segmentation

Deep Learning segmentation suite dessigned for 2D microscopy image segmentation This repository provides researchers with a code to try different enco

7 Nov 03, 2022
Live Hand Tracking Using Python

Live-Hand-Tracking-Using-Python Project Description: In this project, we will be

Hassan Shahzad 2 Jan 06, 2022
Code for the TIP 2021 Paper "Salient Object Detection with Purificatory Mechanism and Structural Similarity Loss"

PurNet Project for the TIP 2021 Paper "Salient Object Detection with Purificatory Mechanism and Structural Similarity Loss" Abstract Image-based salie

Jinming Su 4 Aug 25, 2022
It's a implement of this paper:Relation extraction via Multi-Level attention CNNs

Relation Classification via Multi-Level Attention CNNs It's a implement of this paper:Relation Classification via Multi-Level Attention CNNs. Training

Aybss 2 Nov 04, 2022
UNION: An Unreferenced Metric for Evaluating Open-ended Story Generation

UNION Automatic Evaluation Metric described in the paper UNION: An UNreferenced MetrIc for Evaluating Open-eNded Story Generation (EMNLP 2020). Please

50 Dec 30, 2022
Code for "Single-view robot pose and joint angle estimation via render & compare", CVPR 2021 (Oral).

Single-view robot pose and joint angle estimation via render & compare Yann Labbé, Justin Carpentier, Mathieu Aubry, Josef Sivic CVPR: Conference on C

Yann Labbé 51 Oct 14, 2022
AdaFocus (ICCV 2021) Adaptive Focus for Efficient Video Recognition

AdaFocus (ICCV 2021) This repo contains the official code and pre-trained models for AdaFocus. Adaptive Focus for Efficient Video Recognition Referenc

Rainforest Wang 115 Dec 21, 2022
Dynamic Token Normalization Improves Vision Transformers

Dynamic Token Normalization Improves Vision Transformers This is the PyTorch implementation of the paper Dynamic Token Normalization Improves Vision T

Wenqi Shao 20 Oct 09, 2022
Perspective: Julia for Biologists

Perspective: Julia for Biologists 1. Examples Speed: Example 1 - Single cell data and network inference Domain: Single cell data Methodology: Network

Elisabeth Roesch 55 Dec 02, 2022
Object tracking using YOLO and a tracker(KCF, MOSSE, CSRT) in openCV

Object tracking using YOLO and a tracker(KCF, MOSSE, CSRT) in openCV File YOLOv3 weight can be downloaded

Ngoc Quyen Ngo 2 Mar 27, 2022
An AutoML Library made with Optuna and PyTorch Lightning

An AutoML Library made with Optuna and PyTorch Lightning Installation Recommended pip install -U gradsflow From source pip install git+https://github.

GradsFlow 294 Dec 17, 2022
A curated list of awesome deep long-tailed learning resources.

A curated list of awesome deep long-tailed learning resources.

vanint 210 Dec 25, 2022
code for our BMVC 2021 paper "HCV: Hierarchy-Consistency Verification for Incremental Implicitly-Refined Classification"

HCV_IIRC code for our BMVC 2021 paper HCV: Hierarchy-Consistency Verification for Incremental Implicitly-Refined Classification by Kai Wang, Xialei Li

kai wang 13 Oct 03, 2022
Rule Extraction Methods for Interactive eXplainability

REMIX: Rule Extraction Methods for Interactive eXplainability This repository contains a variety of tools and methods for extracting interpretable rul

Mateo Espinosa Zarlenga 21 Jan 03, 2023
A real-time motion capture system that estimates poses and global translations using only 6 inertial measurement units

TransPose Code for our SIGGRAPH 2021 paper "TransPose: Real-time 3D Human Translation and Pose Estimation with Six Inertial Sensors". This repository

Xinyu Yi 261 Dec 31, 2022
The codebase for our paper "Generative Occupancy Fields for 3D Surface-Aware Image Synthesis" (NeurIPS 2021)

Generative Occupancy Fields for 3D Surface-Aware Image Synthesis (NeurIPS 2021) Project Page | Paper Xudong Xu, Xingang Pan, Dahua Lin and Bo Dai GOF

xuxudong 97 Nov 10, 2022