Extract and visualize information from Gurobi log files

Overview

GRBlogtools

PyPI

Extract information from Gurobi log files and generate pandas DataFrames or Excel worksheets for further processing. Also includes a wrapper for out-of-the-box interactive visualizations using the plotting library Plotly.

performance plot

Installation

python -m pip install grblogtools

It is recommended to prepend the pip install command with python -m to ensure that the package is installed using the correct Python version currently active in your environment. See CHANGELOG for added, removed or fixed functionality.

Usage

First, you need a set of Gurobi log files to compare, e.g.,

  • results from several model instances
  • comparisons of different parameter settings
  • performance variability experiments involving multiple random seed runs
  • ...

You may also use the provided grblogtools.ipynb notebook with the example data set to get started. Additionally, there is a Gurobi TechTalk demonstrating how to use grblogtools (YouTube).

Pandas/Plotly

  1. parse log files:

    import grblogtools as glt
    
    summary, timelines, rootlp = glt.get_dataframe(["run1/*.log", "run2/*.log"], timelines=True)

    Depending on your requirements, you may need to filter or modify the resulting DataFrames.

  2. draw interactive charts, preferably in a Jupyter Notebook:

    • final results from the individual runs:
    glt.plot(summary, type="box")
    • progress charts for the individual runs:
    glt.plot(timelines, y="Gap", color="Log", type="line")

    These are just examples using the Plotly Python library - of course, any other plotting library of your choice can be used to work with these DataFrames.

Excel

Convert your log files to Excel worksheets right on the command-line:

python -m grblogtools myrun.xlsx data/*.log

List all available options and how to use the command-line tool:

python -m grblogtools --help
Owner
Gurobi Optimization
Gurobi Optimization
Pglive - Pglive package adds support for thread-safe live plotting to pyqtgraph

Live pyqtgraph plot Pglive package adds support for thread-safe live plotting to

Martin Domaracký 15 Dec 10, 2022
Attractors is a package for simulation and visualization of strange attractors.

attractors Attractors is a package for simulation and visualization of strange attractors. Installation The simplest way to install the module is via

Vignesh M 45 Jul 31, 2022
This is a small repository for me to implement my simply Data Visualisation skills through Python.

Data Visualisations This is a small repository for me to implement my simply Data Visualisation skills through Python. Steam Population Chart from 10/

9 Dec 31, 2021
Sky attention heatmap of submissions to astrometry.net

astroheat Installation Requires Python 3.6+, Tested with Python 3.9.5 Install library dependencies pip install -r requirements.txt The program require

4 Jun 20, 2022
Show Data: Show your dataset in web browser!

Show Data is to generate html tables for large scale image dataset, especially for the dataset in remote server. It provides some useful commond line tools and fully customizeble API reference to gen

Dechao Meng 83 Nov 26, 2022
Apache Superset is a Data Visualization and Data Exploration Platform

Superset A modern, enterprise-ready business intelligence web application. Why Superset? | Supported Databases | Installation and Configuration | Rele

The Apache Software Foundation 50k Jan 06, 2023
The Python ensemble sampling toolkit for affine-invariant MCMC

emcee The Python ensemble sampling toolkit for affine-invariant MCMC emcee is a stable, well tested Python implementation of the affine-invariant ense

Dan Foreman-Mackey 1.3k Jan 04, 2023
Sparkling Pandas

SparklingPandas SparklingPandas aims to make it easy to use the distributed computing power of PySpark to scale your data analysis with Pandas. Sparkl

366 Oct 27, 2022
This is a Boids Simulation, written in Python with Pygame.

PyNBoids A Python Boids Simulation This is a Boids simulation, written in Python3, with Pygame2 and NumPy. To use: Save the pynboids_sp.py file (and n

Nik 17 Dec 18, 2022
Simple Inkscape Scripting

Simple Inkscape Scripting Description In the Inkscape vector-drawing program, how would you go about drawing 100 diamonds, each with a random color an

Scott Pakin 140 Dec 27, 2022
A D3.js plugin that produces flame graphs from hierarchical data.

d3-flame-graph A D3.js plugin that produces flame graphs from hierarchical data. If you don't know what flame graphs are, check Brendan Gregg's post.

Martin Spier 740 Dec 29, 2022
Focus on Algorithm Design, Not on Data Wrangling

The dataTap Python library is the primary interface for using dataTap's rich data management tools. Create datasets, stream annotations, and analyze model performance all with one library.

Zensors 37 Nov 25, 2022
A declarative (epi)genomics visualization library for Python

gos is a declarative (epi)genomics visualization library for Python. It is built on top of the Gosling JSON specification, providing a simplified interface for authoring interactive genomic visualiza

Gosling 107 Dec 14, 2022
🗾 Streamlit Component for rendering kepler.gl maps

streamlit-keplergl 🗾 Streamlit Component for rendering kepler.gl maps in a streamlit app. 🎈 Live Demo 🎈 Installation pip install streamlit-keplergl

Christoph Rieke 39 Dec 14, 2022
Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js

pivottablejs: the Python module Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js Installation pip install pivot

Nicolas Kruchten 512 Dec 26, 2022
Extract data from ThousandEyes REST API and visualize it on your customized Grafana Dashboard.

ThousandEyes Grafana Dashboard Extract data from the ThousandEyes REST API and visualize it on your customized Grafana Dashboard. Deploy Grafana, Infl

Flo Pachinger 16 Nov 26, 2022
Multi-class confusion matrix library in Python

Table of contents Overview Installation Usage Document Try PyCM in Your Browser Issues & Bug Reports Todo Outputs Dependencies Contribution References

Sepand Haghighi 1.3k Dec 31, 2022
Generate a roam research like Network Graph view from your Notion pages.

Notion Graph View Export Notion pages to a Roam Research like graph view.

Steve Sun 214 Jan 07, 2023
Area-weighted venn-diagrams for Python/matplotlib

Venn diagram plotting routines for Python/Matplotlib Routines for plotting area-weighted two- and three-circle venn diagrams. Installation The simples

Konstantin Tretyakov 400 Dec 31, 2022
PanGraphViewer -- show panenome graph in an easy way

PanGraphViewer -- show panenome graph in an easy way Table of Contents Versions and dependences Desktop-based panGraphViewer Library installation for

16 Dec 17, 2022