logo CoCalc Collaborative Calculation and Data Science CoCalc is a virtual online workspace for calculations, research, collaboration and authoring do

MOSAIC: A modular single-molecule analysis interface MOSAIC is a single molecule analysis toolbox that automatically decodes multi-state nanopore data

DGFEM Maxwell Equations Discontinuous Galerkin finite element method (DGFEM) for Maxwell Equations. Work in progress. Currently, the 1D Maxwell equati

Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications

Mathics is a general-purpose computer algebra system (CAS). It is an open-source alternative to Mathematica. It is free both as in "free beer" and as in "freedom".

SeqLike - flexible biological sequence objects in Python Introduction A single object API that makes working with biological sequences in Python more

A simple mathematical expression evaluator that uses Pokemon types to replace symbols.

Odemis Odemis (Open Delmic Microscope Software) is the open-source microscopy software of Delmic B.V. Odemis is used for controlling microscopes of De

InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu

Python Data Science Handbook This repository contains the entire Python Data Science Handbook, in the form of (free!) Jupyter notebooks. How to Use th

Pybliographer Pybliographer provides a framework for working with bibliographic databases. This software is licensed under the GPLv2. For more informa

InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu

Brachistochrone-curve This is a simple computer program made with Python on the brachistochrone curve. I decided to write it after a physics lesson on

Bioinformatics This is a repository of all the algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos Algorithm

Manim is an engine for precise programatic animations, designed for creating explanatory math videos. Note, there are two versions of manim. This repo

an interactive explorer for single-cell transcriptomics data cellxgene (pronounced "cell-by-gene") is an interactive data explorer for single-cell tra

Beehive A framework for feature exploration in Data Science Background What do we do when we finish one episode of feature exploration in a jupyter no

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

CS 506 - Computational Tools for Data Science Code, slides, and notes for Boston University CS506 Fall 2021 The Final Project Repository can be found

Metaflow Metaflow is a human-friendly Python/R library that helps scientists and engineers build and manage real-life data science projects. Metaflow